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PACR Presentations / Posters

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PACR-Supported Presentations / Posters

 2009

Menon R, States DJ, Omenn GS. Identification of alternative splice variant proteins in Her2/Neu mouse model of human breast cancer. 5th Annual US HUPO Conference-Integrative Proteomics for the Future, San Diego, California, 22-25 February 2009.

Menon R, States DJ, Omenn GS. Identificaion of novel alternative splice isoforms using proteomic informatics with a modified ECGene database. American Medical Informatics Association Summit on Translational Bioinformatics, San Francisco, California, 15-17 March, 2009.

2008

Arenberg, DA, Carskadon SL, Zhao L. Lung injury accelerates growth of lung cancer cells in an orthotopic model of lung cancer. American Thoracic Society, Toronto, Ontario, Canada. 16-21 May, 2008.

Arenberg, DA. Lung injury and repair in the tumor microenvironment. Featured speaker on Tumor Microenvironment Symposium. American Thoracic Society, Toronto, Ontario, Canada. 16-21 May, 2008.

Jagtap P, Falkner JA, Michailidis G, Walker A, Simon E, Omenn G, Keshamouni V, Andrews PC. Unraveling Secrets of the Secretome: Approaches to identifying Secreted Lung Cancer Proteins During Epithelial to Mesenchymal Transition (EMT). Amercian Society for Mass Spectrometry 56th Annual Conference, Denver, Colorado, 1-5 June, 2008.

Jeong S-K, Kwon M-S, Lee E-Y, Cho SY, Kim H, Omenn GS, Aebersold R, Paik Y-K. Proteomedigger: A versatile disease proteome database and analysis platform for the discovery of plasma-localized cancer biomarkers. HUPO 7th Annual World Congress, Amsterdam, The Netherlands, 16-20 August 2008; P-TUE-154, p. 110.

Omenn GS. Proteomics Strategies for Profiling Cancers and Planning Cancer Prevention Interventions. Cancer Prevention Research Retreat, Purdue University, West Lafayette, Indiana, 11 April, 2008.

Yocum AK, Gratsch TE, Leff N, Strahler JR, Walker AK, Michailidis G, Omenn GS, O’Shea KS, Andrews PC. Proteomic analysis of the effects of BMP4 exposure on human embryonic stem cells. HUPO 7th Annual World Congress, Amsterdam, The Netherlands, 16-20 August, 2008, P-MON-348, p.95.

Omenn GS. Strategies for Proteomics Profiling of Cancers, Radiation Oncology Morning Conference, University of Michigan Health System, Ann Arbor, MI, 10 January, 2008.

Omenn GS. Advances in Proteomics: Technology platforms, databases, and biomarker discovery. Plant and Animal Genome XVI, San Diego, California 12-16 January, 2008, p. 5.

2007

Amunugama R, Keshamouni VG, Michailidis G, Schultz S, Allen DL, Jones RC, Omenn GS, Pisano MR. A comprehensive SILAC/GeLC/MS analysis of TGF?-induced epithelial-mesenchymal transition (EMT) in lung cancer cells. HUPO 6th Annual World Congress, Seoul, Korea, 6-11 October, 2007.

Chen J, Kuick R, Anthwal S, Omenn GS, Standiford TS, Keshamouni VG. Epithelial-Mesenchymal Transition Confers an Anti-Proliferative, and Anti-Apoptotic Phenotype in Addition to Migratory/Invasive phenotype in Lung Cancer Cells to Promote Metastasis. 3rd Epithelial Mesenchymal Tansitions Meeting, Larisha Palace, Krakow, Poland, 10-14 September, 2007.

Omenn GS. Biomarker discovery from tumor tissues and plasma. Conference on Mass Spectrometry in Clinical Chemistry and Molecular Diagnostics. Asilomar, California, 14-18 September, 2007.

Omenn GS. Multiple proteomics strategies for cancer biomarker discovery. HUPO 6th Annual World Congress, Seoul, Korea, 6-11 October, 2007.

Omenn GS, Aebersold R, Paik Y-K. Exploring the Human Plasma Proteome: The HUPO Plasma Proteome Project, A Foundation for Biomarker Studies. HUPO 6th Annual World Congress, Seoul, Korea, 6-11 October, 2007.

Omenn GS. Proteomics strategies for discovery of cancer biomarkers. Celebrating the 50th Anniversary of Medical Genetics, University of Washington, Seattle, Washington, October 12-13. 2007.

Omenn GS. The M.D. Moross Lecture in Cancer Research: Proteomics Strategies for Profiling Cancers and Planning Preventive Interventions. Cancer Prevention – Translational Research from the Bench to Public Health. Weizmann Institute of Science, Rehovot, Israel, October 18, 2007.

Omenn GS. Proteomics strategies and applications for nutritional research. 1st Congress of the International Society of Nutrigenetics/Nutrigenomics, Athens, Greece, 11-13 November, 2007, J Nutrigenet Nutrigenomics 2008; 1:51-90, 61.

Andrews P. Mouse models consortia data on ProteomeCommons.org Tranche
Tranche.proteomecommons.org. NIH presentation, Mouse Proteomic Technologies Initiative and CPTAC Teams Meeting, Seattle, Washington, 9 March, 2007, p. 215-233.

Andrews PC, Falkner JA. Tranche open and secure proteomics data sharing and Google-like interface for searching proteomics data. Accepted poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Arenberg, DA, Carskadon SL, Zhao L, White ES, McClelland MR. The tumor microenvironment modulates the angiogenic phenotype in lung cancer. Diversity and plasticity of the angiogenic switch in lung cancer. American Thoracic Society, San Francisco, CA. 18-23, May 2007.

Dezso Z, Vellaichamy A, Dhanasekaran S, Sreekuman A, Chinnaiyan A, Omenn GS, Nikolsky Y, Nikolskaya T, Bugrim A. Networking genes with protein: finding relations between proteomic and gene expression datasets using topology of the global interaction network. Wed Poster 71, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p. 75.

Falkner J, Andrews P. ProteomeCommons.org Tranche: Publicly storing and sharing proteomics data. Wed Poster 29, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p 64.

Falkner J, Andrews PC. Tranche: decentralized data storage for the proteomics community. Poster presentation, Association of Biomolecular Resource Facilities ’07: Creating the Biological Roadmap, Tampa, Florida. (Poster Contest Winner), 31 March-3 April, 2007.

Falkner JA, Yocum A, Falkner JW, Andrews PC. Bonanza: spectral searching to find both known peptides and peptides with unknown modifications. Accepted poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Fermin D, Menon R, Blackwell T, Omenn GS, States DJ. Evidence for novel translation products of alternative splice isoforms in the Human Plasma Proteome. Tues Poster 72, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p. 55.

Forrester S. Low-volume sandwich assays for proteomics studies on mouse models of cancer. NIH presentation, Mouse Proteomic Technologies Initiative and CPTAC Teams Meeting, Seattle, Washington, 9 March, 2007, p. 163-173.

Forrester S, Hung K, Kuick R, Kucherlapati R, Haab B. Altered levels of specific plasma proteins in a mouse model of intestinal tumors identified using low-volume, high-throughput sandwich immunoassays. Tues Poster 45, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p. 48.

Gonzalez R, Servoss S, Varnum S, White A, Collette J, Omenn GS, Hayes D, Daly D, Zangar R. An ELISA microarray platform for validating markers of breast cancer. AACR Special Conference – Advances in Breast Cancer Research, San Diego, California, 17-20 October, 2007.

Kachman MT, Yocum AK, Veine D, Walker AK, Strahler JR, Andrews PC. A comparison of SEQUEST, Mascot and X!Tandem search algorithms and the MALDI-TOF/ and LTQ-Orbi Trap mass spectrometers. Poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana. 3-7 June, 2007.

Menon R, Hung K, Kucherlapati R, Sarracino D, Omenn GS, Hanash S, States DJ. Qualitative and quantitative changes in plasma proteins of mouse models for cancer. Wed Poster 05, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p. 57.

Nesvizhskii A. Algorithms for evaluating spectral quality and identifying new assignments. NIH presentation, Mouse Proteomic Technologies Initiative and CPTAC Teams Meeting, Seattle, Washington, 9 March, 2007, p. 203-214.

Omenn GS, States DJ. Highlights of Eastern Consortium mouse models of human cancers: proteomics & informatics. NIH presentation, Mouse Proteomic Technologies Initiative and CPTAC Teams Meeting, Seattle, Washington, 9 March, 2007, p. 125-146.

Omenn GS. Challenges of standardization of molecular profile data: proteomics. Oral Presentation. American Association for Cancer Research Annual Meeting, Los Angeles, California, 14-18 April 2007.

Omenn GS. A systems biology approach to molecular profiling of cancer. University of Nebraska Medical Center, Omaha, Nebraska, 4 May, 2007.

Omenn GS. Exploring the Human Plasma Proteome. Michigan Gut Peptide Research Center Annual Research Symposium, University of Michigan, Ann Arbor, Michigan, 7 June, 2007.

Omenn GS. Proteomics Strategies for Profiling Cancers, Including Biological Amplification through Auto-Antibodies. Association of Medical Laboratory Immunologists 20th Annual Meeting, Chicago, Illinois, 9-12 August, 2007.

Strahler JR, Walker AK, Michailidis G, Singh A, Friedman J, Andrews PC. Evaluation of multiple search engines in the analysis of leptin-induced mitochondrial protein expression in mouse liver. Accepted poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

States DJ, Menon R, Fermin D, Blackwell T, Kuick R, Omenn GS. Eastern Consortium Informatics. NIH presentation, Mouse Proteomic Technologies Initiative and CPTAC Teams Meeting, Seattle, Washington, 9 March, 2007, p. 103-123.

Ulintz PJ, Bodenmiller B, Aebersold R, Andrews PC, Nesvizhskii AI. A statistical model for improving probability scores of coupled MS2 and MS3 mass spectrometry data. Poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Willetts M, Minkoff M, Ulintz P, Marks R, Andrews P. Identification and quantitation of isobarically labeled proteins. A comparison of separation strategies. Poster presentation, Association of Biomolecular Resource Facilities ’07: Creating the Biological Roadmap, Tampa, Florida, 31 March-3 April, 2007.

Willetts M, Ulintz P, Minkoff M, Marks R, Andrews P. A comparison of separation strategies for proteomic samples labeled with iTRAQ™ reagents at the protein level. poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Wu Y-M, Lunger J, Omenn GS, Haab B. Multiplexed detection of protein and phosphorylation variation in response to androgen withdrawal in LNCaP cells. Poster presentation, American Association for Cancer Research Annual Meeting, Los Angeles, California., 14-18 April, 2007.

Yocum AK. Global proteomic characterization to targeted MRM analysis for identification and validation of changes in human embryonic stem cells during Noggin and BMP4 induced differentiation. University of Pennsylvania, 6 April, 2007.

Yocum AK. Making the transition from discovery proteomic to targeted MRM for validating changes in hESCs during Noggin and BMP4 treatment. Michigan Symposium on Genomic Biology, University of Michigan, Ann Arbor, Michigan, 16 April, 2007.

Yocum AK, Hunter CL, O’Shea KS, Andrews PC. The transition from global proteomics to targeted MRM analysis for validation of changes in hESCs during Noggin- and BMP4- induced differentiation. Accepted poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Yocum AK. Scaffold: Greater capability for validating peptide and protein identifications. Oral presentation. American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana,
3 June, 2007.

Yocum AK. From discovery proteomics to targeted MRM for verification of markers in human embryonic stem cells. Oral presentation. American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 6 June, 2007.

Andrews PC. Quantitative Proteomics. Keynote address – Purdue University Biochemistry Department Annual Retreat, Wright Forestry Center, West Lafayette, Indiana, August, 2007.

Chen X, Strahler J, Sans MD, Williams J, Andrews PC. Proteomics of acute pancratitis in rat rough endoplasmic reticulum. Accepted poster presentation, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Paik Y, Aebersold R, Omenn GS, Kim H, Lee E, Jeong S, Kwon M, Choi E, Na K, Jeong A, Cho S. Update on the HUPO Human Plasma Proteome Project (PPP). Poster, KHUPO Annual International Proteomics Conference, Seoul, Korea, 29-30 March, 2007.

Simon E, Young MA, Andrews PC. Methyl esterification of peptides improves the isolation of phosphorylated peptides from titanium dioxide. Poster, American Society for Mass Spectrometry 55th Annual Meeting, Indianapolis, Indiana, 3-7 June, 2007.

Weymouth T, Tarcea VG, Triplett TL, Ade AS, Gao J, Kirschner B, de Wet JR, Jayapandian M, Chapman A, Yu C, Elkiss A, Ianni A, Liu B, Arnab N, Santos C, Andrews P, Omenn GS, Athey BD, Cavalcoli J, States DJ, Jagadish HV. Michigan Molecular Interactions Index (MiMI). Tues Poster 63, US HUPO Mtg., Seattle, Washington, 4-8 March, 2007, p. 53.

Omenn GS. New approaches in tissue and biofluid analysis. Oral presentation, AACR Special Conference in Cancer Research: Advances in Proteomics in Cancer Research, Amelia Island, Florida, 27 February-2 March, 2007

Nesvizhkii A. Analysis and statistical validation of proteomic datasets. Oral presentation. AACR Special Conference in Cancer Research: Advances in Proteomics in Cancer Research, Amelia Island, Florida, 27 February-2 March, 2007

Yocum AK. Proteomic examination of targeted differentiation of human embryonic stem cells by iTRAQ and MRM analysis. Applied Biosciences, Foster City, California, 22 February, 2007.

2006

Amunugama R, Keshamouni VG, Allen D, Hagler R, Allen B, Omenn G, Pisano M. Utilizing the SILAC strategy to analyze differential protein expression during TGF-beta-induced epithelial-mesenchymal transition in lung cancer cells. Poster 71, US HUPO Mtg, Boston, 12-15 March, 2006, p. 50.

Amunagama R, Keshamouni V, Allen D, Hagler R, Omenn GS, Nesvizhiskii A, Pisano M. Differential protein expression during TGF-beta-induced epithelial-mesenchymal transition in lung cancer cells utilizing the SILAC strategy. HUPO 5th Annual World Congress, Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S244.

Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Ulintz P, Omenn GS, States DJ. Identifying novel genes in the human genome using tandem mass spectra. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S308.

Keshamouni VG, Anthwal S, Kuick R, Thannickal VJ, Omenn GS, Standiford TJ. Epithelial-mesenchymal transition inhibits tumor cell growth while inducing migratory/invasive phenotype, to promote metastasis. AACR Special Conference: TGF-beta in Cancer and Other Diseases, La Jolla, CA, Feb 8-11, 2006.

Keshamouni VG, Kuick R, Misek DE, Amunugama R, Allen DL, Pisano MR, Hanash SM, Omenn GS. DIGE analysis of the epithelial-mesenchymal transition in lung cancer cells identifies HSPB1 as a potential regulator of the mesenchymal phenotype. Poster 62, US HUPO Mtg, Boston, March 12-15, 2006, p.47.

Menon R, Blackwell TW, Hung KE, Krastins B, Sarracino DA, Omenn GS, States DJ. Correlated evolution of mammalian plasma protein sequences and abundances based on comparative analysis of the human and mouse plasma proteomes. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S307.

Omenn GS, Paik Y-K, Mann M. The HUPO Plasma Proteome Project; Next phase. HUPO 5th Annual World Congress, Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S173.

Omenn GS. Critical issues for bioinformatics in the HUPO Plasma Proteome Project (HPPP). HUPO 5th Annual World Congress, Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S379.

Strahler JR, Gratsch TE, Leff NS, Michailidis G, Omenn GS, O’Shea KS, Andrews PC. Neuronal differentiation of human embryonic stem cells by noggin exposure induces a novel protein signature identified by iTRAQ analysis. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S272.

Vellaichamy A, Sreekumar A, Taylor BS, Zhao R, Strahler JR, Mehra R, Dhanasekaran SM, Michailidis G, Varambally S, Nesvizhskii AI, Andrews PC, Omenn GS, Chinnaiyan AM. OMICS of androgen action in prostate cancer. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S312.

Veresh KM, Strahler JR, States DJ, Blackwell TW. Predicting identification success for iTRAQ-modified peptides from MS/MS spectra. Poster 53, US HUPO Mtg, Boston, March 12-15, 2006, p.45.

Yin S, Menon R, Blackwell TW, Hung K, Sarracino D, States DJ. Consensus search approaches for protein identification by tandem mass spectrometry. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S305.

2005

Keshamouni VG, Grasso CS, Michailidis G, Andrews PC, Omenn GS. Differential protein expression profiling by iTRAQ-2DLC-MS/MS reveals a prometastic phenotype in TGF-beta-induced epithelial-mesenchymal transitions in human lung cancer cells. HUPO conference, Munich, Germany. August 28-Sept 1, 2005.

PACR-Related Presentations / Posters

 2009

Karnovsky A, Gao J, Tarcea G, Beecher C, Burant C, Mirel B, Jagadish HV, Omenn GS. Bioinformatics framework for the analysis and interpretation of metabolomic data. American Medical Informatics Association Summit on Translational Bioinformatics, San Francisco, California, 15-17 March, 2009.

Yan W, Yu W, Mueller M, Cole S, Omenn GS, Loo J, Apweiler R, Wong DT. Systemiatic comparison of two human body fluid proteomes, saliva and plasma. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006. Mol &Cellular Proteomics. October 2006; 5.10:S301.
6/1/2009 

2008

Andrews PC, Smith BE, Hill JA, Gjukich MA, Falkner JA. A Public Network for Publishing Proteomics Data and Tools. American Society for Mass Spectrometry 56th Annual Conference, Denver, 1-5 June, 2008.

Andrews PC. Organellar proteomics and proteome informatics. The Barnett Institute, Northeastern University, Boston, 13 November, 2008.

Cavacoli JD, Omenn GS. Bridging experiments using integrative tools. 16th Annual International Conference Intelligent Systems for Molecular Biology. Toronto, Canada, 19-23 July, 2008.

Chen X, Sans D, Vogel N, Andrews P, Williams JA. Organeller proteomics analysis of rough endoplasmic reticulum (RER) from normal and acute pancreatitis rat pancreas. American Gastroenterological Association-Digestive Disease Week, San Diego, 17-22 May, 2008

Chen X, Ulintz P, Simon E, Andrews PC. Global Topography Analysis of Pancreatic Zymogen Granule Membrane Proteins. American Society for Mass Spectrometry 56th Annual Conference, Denver, 1-5 June, 2008.

Falkner J, Yocum AK, Jagtap P, Andrews PC. Spectral clustering of MS/MS data to identify unknown peptide modifications and estimate identifiable spectra. American Society for Mass Spectrometry 56th Annual Conference, Denver, 1-5 June, 2008.

Kweon HK, Ulintz P, Andrews PC. Evaluation and optimization of phosphoproteomic approaches combining selective metal oxide-based enrichment with peptide fractionation methods. American Society for Mass Spectrometry 56th Annual Conference, Denver, 1-5 June, 2008.

Omenn GS. Pathways Toward Building a Supercourse of Science. Symposium on Power of the Internet to Facilitate Science Education and Networking: The Supercourse of Science. AAAS Annual Meeting, Boston, Massachusetts, 14-18 February, 2008.

Omenn GS, LaPorte R, Seragelin I, Linkov F. Power of the Internet to Facilitate Science Education and Networking: The Supercourse. AAAS Annual Meeting, Boston, Massachusetts, 14-18 February, 2008.

Omenn GS. Evolution, Genomics, and Human Disease, International Symposium on Darwin in Medicine, Universidad Nacional Autonoma de Mexico, Mexico City, 23-25 April, 2008.

Omenn GS. Frontier Science and the Grand Challenges: Investing in High-Potential Individuals and High-Payoff Scientific Fields. The European Research Council for a Policy of Excellence: The First Award Winners Pave the Way; Symposium Celebrating Frontier Science, College de France, Paris, France, 7 October, 2008.

Papoulias PG, Lentz DH, Andrews PC. PRIME: Proteome Research Information Management Environment for High-throughput Proteomics Laboratories. Amercian Society for Mass Spectrometry 56th Annual Conference, Denver, Colorado, 1-5 June, 2008.

Phillip J, Papoulias PG, Tempst P, Andrews PC. HERMES: Platform Independent Open Source Project for Submitting DATA Files to MASCOT. Amercian Society for Mass Spectrometry 56th Annual Conference, Denver, Colorado, 1-5 June, 2008.

States DJ, Floratos A, Kohane I, Kretzler M, Omenn GS. High Dimensionality Data in Translational Research. American Medical Informatics Association, 2008 AMIA Summit on Translational Bioinformatics, San Francisco, California, 10-12 March, 2008. S14, p. 14.

Ulintz P, Yocum AK, Bodenmiller B, Aebersold R, Andrews P, Nesvizhskii AI. Comparison of MS2-only, MSA, and MS2/MS3 methodologies for phosphopeptide identification. Amercian Society for Mass Spectrometry 56th Annual Conference, Denver, Colorado, 1-5 June, 2008.

Wang X, Dhanasekaran M, Shah N, Han B, Ade A, Ke L, Meng F, Mehra R, Palanisamy N, Omenn GS, Chinnaiyan A. Genomic-scale screening for gene fusions in solid tumors by integrative biomedical informatics. 16th Annual International Conference Intelligent Systems for Molecular Biology. Toronto, Canada, 19-23 July, 2008.

2007

Nesvizhskii, AI. Computational analysis of proteomic data generated using tandem mass spectrometry. Samuel Lunenfeld Research Institute, Toronto, Ontario, Canada, November 5, 2007.

Nesvizhskii AI. Computational analysis of shotgun proteomic data. Stowers Institute for Medical Research, Kansas City, Missouri, November 13, 2007.

Nesvizhskii AI. Assigning Confidence to Peptide Identifications. NCI/NIST Workshop for Next-Generation Methods of Peptide Identification, Gaithersburg, Maryland, November 15, 2007.
(Available online at: http://proteomics.cancer.gov/news_events/meetings_events/presentations/NCI-NIST_MeetingSummary.pdf

2006

Andrews P. Data dissemination in proteomics. ABRF meeting, Long Beach, 11-14 Feb 11-14, 2006.

Andrews P. The Proteome Commons Dissemination System. USHUPO, Boston, 11-13 March, 2006.

Andrews P. Quantitative Proteomics, Genomics Solutions. Ann Arbor, 29 March, 2006.

Blackwell TW, States DJ, Omenn GS. Mass spectrometry identifications of mucin 16 in the HUPO Plasma Proteome Project pilot phase. Poster 138, US HUPO Mtg, Boston, 12-15 March, 2006, p.66.

Bugrim AE, Dezso Z, Nikolsky Y, Nikolskaya T. Network-based analysis of integrated proteomic and gene expression datasets. Poster 83, US HUPO Mtg, Boston, 12-15 March, 2006, p.53.

Chen X, Simon ES, Veine DM, Williams JA, Andrews PC. Molecular architecture of pancreatic zymogen granule membrane. American Society for Mass Scectrometry, Seattle, 28 May-1 June, 2006.

Faulkner J, Andrews PC: The Proteome Commons (www.proteomecommons.org) system for dissemination and annotation of proteomics data. US HUPO Mtg, Boston, 14 March, 2006, p.28.

Fermin DE, Allen BB, Blackwell TW, Menon R, Adamski M, Ulintz PJ, Omenn GS, States DJ. Improved statistics for assessing database search significance identify novel translation products of the human genome using tandem mass spectra. Poster 38, US HUPO Mtg, Boston, 12-15 March, 2006, p.41.

Hunter CL, Bramwell C, Strahler J, Gratsch TE, Leff NS, O’Shea KS, Andrews PC. MRM Analysis of iTRAQ peptides for validation of changes in BG01 stem cells during Noggin-and BMP4-induces differentiation. HUPO 5th Annual World Congress. Long Beach, California, 28 October-1, November, 2006.

Kowalak JA, Andrews PC, Arnott D, Gawinowicz MA, Lane W, Lilley KS, Martin L, Stein SE. ABRF-sPRG2006 Study: A proteomics standard. American Society for Mass Spectrometry, Seattle, 28 May-1 June, 2006.

Menon R, Hung K, Krastins B, Blackwell TW, Sarracino DA, Omenn GS, States DJ. Comparative analysis of the human and mouse plasma proteomes: correlated evolution of mammalian plasma protein sequence and abundance. Poster 54, US HUPO Mtg, Boston, March 12-15, 2006, p.45.

Nesvizhskii AI, Eddes JS, Roos FF, Grossman J, Vogelzang M, Baginsky S, Aebersold R. Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data. Poster 50, US HUPO Mtg, Boston, March 12-15 2006, p.44.

Omenn GS. Proteomics Informatics. Lecture: Bioinformatics 551, The University of Michigan, Jan 5, 2006

Omenn GS. e-Clinical Research. Lecture: Chemical Engineering 696, The University of Michigan, Jan 5, 2006

Omenn GS. Highlights of the HUPO Plasma Proteome Project. CHI, The Plasma Proteome, San Diego, Jan 10, 2006

Omenn GS. The next phase of the HUPO Plasma Proteome Project. Poster 29, US HUPO Mtg, Boston, March 14, 2006 (workshop), p.39.

Omenn GS. Grand Challenges and Great Opportunities in Science, Technology and Public Policy, AAAS Presidential Address. American Association for the Advancement of Science, St. Louis, Feb 16, 2006.

Omenn GS. Plasma protein profiles associated with cancers, ASBMB Symposium on Protein Profiling in Normal and Disease States, Experimental Biology 2006, San Francisco,
Apr 2, 2006.

Omenn GS. Genomics and Public Health. Lecture: HMP 517: Issues in Public Health Genetics, The University of Michigan, School of Public Health, Apr 13, 2006.

Omenn GS. Grand Challenges and Opportunities in Math & Science, National Council of Teachers of Mathematics Annual Meeting and Exposition, St. Louis, Apr 27, 2006.

Omenn GS. The HUPO Plasma Proteome Project: Results and Plans, HUPO Liver Project Workshop, Bilboa, Spain, May 4, 2006.

Omenn GS. Molecular Signatures and Mechanisms of Chemical Toxicity: Keys to Better Risk Assessment, American Chemical Society, Washington, DC, June 4, 2006.

Omenn GS. The HUPO Plasma Proteome Project: Results and Plans. IV Symposium on Proteomics, XXXV Annual Meeting of the Brazilian Society of Biochemistry and Molecular Biology, Campinas, Brazil, Jul 4, 2006.

Omenn GS. Grand Challenges for Science and Technology, Third Annual Meeting of the Science and Technology in Society Forum, Kyoto, Japan, Sept 9-12, 2006.

Omenn GS. From Genomics to Targeted Medicines: Therapies for Cancers, BA518: Business of Biology, The University of Michigan, Life Sciences Institute, Sept 27, 2006.

Simonian MH, Ratnayake CK, Song Y, Allen D, Amunugama R, Pisano M. Human plasma proteome partitioning by IgY antibodies to abundant proteins coupled with fractionation by multidimensional chromatography. US HUPO Mtg, Boston, March 12-15, 2006, p.33.

Taylor BS, Sreekumar A, Pal M, Yu J, Shen R, Zhao R, Wei JT, Ghosh D, Lubman DM, Chinnaiyan AM. Identification and analysis of differential humoral response targets in prostate cancer. HUPO 5th Annual World Congress. Mol & Cellular Proteomics. Oct 2006;5:S306.

2005

Omenn GS. Capacity-Building for Science & Technology. International Forum on Science and Technology in Society, Kyoto, Japan, September 11-13, 2005.

Omenn GS. From Genomics to Targeted Medicine: Therapies for Cancers. Lecture: BA 518-The Business of Biology, Business School, University of Michigan, Sept 26, 2005.

Omenn GS. Challenges of Proteomics Analyses of Human Plasma Proteins. Keynote, Swedish Proteomics Society, Stockholm, Oct 9, 2005

Omenn GS. Challenges of Proteomics Analyses of the Human Plasma Proteome. Lecture: Bioinformatics 526/527, University of Michigan, Nov 15, 2005